Studies on the influence of integrated nutrient management on status of micronutrients and yield of crops in rice-niger cropping sequence revealed that the availability of DTPA extractable Fe, Mn and Zn were significantly higher in the treatment of 50% N (inorganic) + 50% N (FYM) + PK (inorganic and adjusted), followed by 50% of the recommended dose of fertilizer (RDF) + 50% N FYM. Availability of DTPA Cu and hot water soluble B in soil were increased by 37.88 and 47.70% after rice and 41.98 and 50.72% after niger, respectively, over control, when 50% recommended dose of fertilizers were substituted through 50% N through FYM. However, the treatment of 50% RDF + 50% N farm yard manure (FYM) showed the highest uptake of micronutrients (DTPA extractable Fe, Mn, Zn, Cu and HWS-B) by both rice and niger crop. Besides, application of 50% RDF along with 50% N FYM significantly increased the straw (7.05 t ha^-1) and grain (4.08 t ha^-1) yield of wet season rice and stover (1.96 t ha^-1) and seed (0.28 t ha^-1) yield of dry season niger over control and RDF.